60 std::unique_ptr<ROOT::RFieldBase>
CloneImpl(std::string_view )
const final
62 return std::make_unique<RRDFCardinalityField>();
97 *
static_cast<std::size_t *
>(to) =
size;
106 *
static_cast<std::size_t *
>(to) =
size;
120 std::unique_ptr<ROOT::RFieldBase>
CloneImpl(std::string_view)
const final
160 std::unique_ptr<RFieldBase::RValue>
fValue;
195 auto onDiskType =
source.GetSharedDescriptorGuard()->GetFieldDescriptor(
fField->GetOnDiskId()).GetTypeName();
196 std::string
msg =
"RNTupleDS: invalid type \"" +
fField->GetTypeName() +
"\" for column \"" +
199 throw std::runtime_error(
msg);
208 fValue = std::make_unique<RFieldBase::RValue>(
fField->CreateValue());
228 return fValue->GetPtr<
void>().get();
284 fieldDesc.GetTypeName().substr(0, 12) ==
"std::vector<" ||
fieldDesc.GetTypeName() ==
"");
314 f.SetOnDiskId(desc.
FindFieldId(
f.GetFieldName(),
f.GetParent()->GetOnDiskId()));
320 if (
info.fNRepetitions > 0) {
323 cardinalityField = std::make_unique<ROOT::Internal::RDF::RRDFCardinalityField>();
378 fPrincipalDescriptor =
pageSource->GetSharedDescriptorGuard()->Clone();
379 fStagingArea.emplace_back(std::move(
pageSource));
381 AddField(fPrincipalDescriptor,
"", fPrincipalDescriptor.GetFieldZeroId(),
382 std::vector<ROOT::RDF::RNTupleDS::RFieldInfo>());
393 static std::once_flag
flag;
394 std::call_once(
flag, []() {
405std::unique_ptr<ROOT::Internal::RPageSource> CreatePageSource(std::string_view
ntupleName, std::string_view fileName)
431std::unique_ptr<ROOT::Detail::RDF::RColumnReaderBase>
435 const auto index = std::distance(fColumnNames.begin(), std::find(fColumnNames.begin(), fColumnNames.end(),
name));
446 return fld->GetTypeName() == requestedType;
453 throw std::runtime_error(
"RNTupleDS: Could not create field with type \"" +
requestedType +
454 "\" for column \"" + std::string(
name));
467 fFieldId2QualifiedName[
field->GetOnDiskId()] = fPrincipalDescriptor.GetQualifiedFieldName(
field->GetOnDiskId());
468 for (
const auto &s : *
field) {
469 fFieldId2QualifiedName[s.GetOnDiskId()] = fPrincipalDescriptor.GetQualifiedFieldName(s.GetOnDiskId());
472 auto reader = std::make_unique<ROOT::Internal::RDF::RNTupleColumnReader>(
this,
field);
473 fActiveColumnReaders[
slot].emplace_back(
reader.get());
481 std::unique_lock lock(fMutexStaging);
482 fCvStaging.wait(lock, [
this] {
return fIsReadyForStaging || fStagingThreadShouldTerminate; });
483 if (fStagingThreadShouldTerminate)
488 fHasNextSources =
true;
489 fIsReadyForStaging =
false;
492 fCvStaging.notify_one();
498 const auto nFiles = fFileNames.empty() ? 1 : fFileNames.size();
499 for (
auto i = fNextFileIndex; (i <
nFiles) && ((i - fNextFileIndex) < fNSlots); ++i) {
500 if (fStagingThreadShouldTerminate)
503 if (fStagingArea[i]) {
507 fStagingArea[i] = CreatePageSource(fNTupleName, fFileNames[i]);
508 fStagingArea[i]->LoadStructure();
515 assert(fNextRanges.empty());
516 auto nFiles = fFileNames.empty() ? 1 : fFileNames.size();
523 while ((fNextRanges.size() < fNSlots) && (fNextFileIndex <
nFiles)) {
526 std::swap(fStagingArea[fNextFileIndex],
range.fSource);
528 if (!
range.fSource) {
531 range.fSource = CreatePageSource(fNTupleName, fFileNames[fNextFileIndex]);
533 range.fSource->Attach();
541 fNextRanges.emplace_back(std::move(
range));
550 for (std::size_t i = 0; (fNextRanges.size() < fNSlots) && (fNextFileIndex <
nFiles); ++i) {
551 std::unique_ptr<ROOT::Internal::RPageSource>
source;
552 std::swap(fStagingArea[fNextFileIndex],
source);
555 source = CreatePageSource(fNTupleName, fFileNames[fNextFileIndex]);
585 unsigned int iSlot = 0;
600 range.fSource->SetEntryRange({start, end - start});
601 range.fFirstEntry = start;
602 range.fLastEntry = end;
603 fNextRanges.emplace_back(std::move(
range));
610 std::vector<std::pair<ULong64_t, ULong64_t>> ranges;
619 for (
auto r : fActiveColumnReaders[0]) {
620 r->Disconnect(
true );
626 if (fCurrentRanges.empty() || (fSeenEntries > 0)) {
630 std::unique_lock lock(fMutexStaging);
631 fCvStaging.wait(lock, [
this] {
return fHasNextSources; });
634 if (fNextRanges.empty()) {
639 assert(fNextRanges.size() <= fNSlots);
641 fCurrentRanges.clear();
642 std::swap(fCurrentRanges, fNextRanges);
647 std::lock_guard
_(fMutexStaging);
648 fIsReadyForStaging =
true;
649 fHasNextSources =
false;
651 fCvStaging.notify_one();
658 fFirstEntry2RangeIdx.clear();
660 for (std::size_t i = 0; i < fCurrentRanges.size(); ++i) {
663 if (fCurrentRanges[i].fFirstEntry == 0) {
668 auto start = fCurrentRanges[i].fFirstEntry + fSeenEntries;
669 auto end = fCurrentRanges[i].fLastEntry + fSeenEntries;
672 fFirstEntry2RangeIdx[start] = i;
673 ranges.emplace_back(start, end);
677 if ((fNSlots == 1) && (fCurrentRanges[0].fSource)) {
678 for (
auto r : fActiveColumnReaders[0]) {
679 r->Connect(*fCurrentRanges[0].fSource, ranges[0].first);
692 for (
auto r : fActiveColumnReaders[
slot]) {
702 for (
auto r : fActiveColumnReaders[
slot]) {
703 r->Disconnect(
true );
712 auto msg = std::string(
"RNTupleDS: There is no column with name \"") + std::string(
colName) +
"\"";
713 throw std::runtime_error(
msg);
717 return fColumnTypes[
index];
722 return std::find(fColumnNames.begin(), fColumnNames.end(),
colName) != fColumnNames.end();
729 fIsReadyForStaging = fHasNextSources = fStagingThreadShouldTerminate =
false;
730 fThreadStaging = std::thread(&RNTupleDS::ExecStaging,
this);
731 assert(fNextRanges.empty());
733 if (fCurrentRanges.empty() || (fFileNames.size() > fNSlots)) {
736 std::lock_guard
_(fMutexStaging);
737 fIsReadyForStaging =
true;
739 fCvStaging.notify_one();
743 fNextFileIndex = std::max(fFileNames.size(), std::size_t(1));
749 for (
unsigned int i = 0; i < fNSlots; ++i) {
750 for (
auto r : fActiveColumnReaders[i]) {
751 r->Disconnect(
false );
755 std::lock_guard
_(fMutexStaging);
756 fStagingThreadShouldTerminate =
true;
758 fCvStaging.notify_one();
759 fThreadStaging.join();
762 if (fFileNames.size() > fNSlots) {
763 fCurrentRanges.clear();
765 fStagingArea.clear();
766 fStagingArea.resize(fFileNames.size());
775 fActiveColumnReaders.resize(fNSlots);
size_t size(const MatrixT &matrix)
retrieve the size of a square matrix
unsigned long long ULong64_t
ROOT::Detail::TRangeCast< T, true > TRangeDynCast
TRangeDynCast is an adapter class that allows the typed iteration through a TCollection.
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t Float_t r
Option_t Option_t TPoint TPoint const char GetTextMagnitude GetFillStyle GetLineColor GetLineWidth GetMarkerStyle GetTextAlign GetTextColor GetTextSize void char Point_t Rectangle_t WindowAttributes_t index
R__EXTERN TSystem * gSystem
void GetCollectionInfo(const ROOT::NTupleSize_t globalIndex, RNTupleLocalIndex *collectionStart, ROOT::NTupleSize_t *collectionSize)
For offset columns only, look at the two adjacent values that define a collection's coordinates.
An artificial field that provides the size of a fixed-size array.
void GenerateColumns(const ROOT::RNTupleDescriptor &) final
Implementations in derived classes should create the backing columns corresponding to the field type ...
std::unique_ptr< ROOT::RFieldBase > CloneImpl(std::string_view) const final
Called by Clone(), which additionally copies the on-disk ID.
void ReadGlobalImpl(ROOT::NTupleSize_t, void *to) final
RArraySizeField(const RArraySizeField &other)=delete
RArraySizeField(RArraySizeField &&other)=default
RArraySizeField & operator=(RArraySizeField &&other)=default
void ReadInClusterImpl(RNTupleLocalIndex, void *to) final
std::size_t GetValueSize() const final
The number of bytes taken by a value of the appropriate type.
RArraySizeField(std::size_t arrayLength)
void ConstructValue(void *where) const final
Constructs value in a given location of size at least GetValueSize(). Called by the base class' Creat...
~RArraySizeField() final=default
RArraySizeField & operator=(const RArraySizeField &other)=delete
std::size_t GetAlignment() const final
As a rule of thumb, the alignment is equal to the size of the type.
void GenerateColumns() final
Implementations in derived classes should create the backing columns corresponding to the field type ...
Every RDF column is represented by exactly one RNTuple field.
void * GetImpl(Long64_t entry) final
void Connect(RPageSource &source, Long64_t entryOffset)
Connect the field and its subfields to the page source.
RNTupleColumnReader(RNTupleDS *ds, RFieldBase *protoField)
std::unique_ptr< RFieldBase::RValue > fValue
The memory location used to read from fField.
std::unique_ptr< RFieldBase > fField
The field backing the RDF column.
Long64_t fEntryOffset
For chains, the logical entry and the physical entry in any particular file can be different.
std::shared_ptr< void > fValuePtr
Used to reuse the object created by fValue when reconnecting sources.
RNTupleDS * fDataSource
The data source that owns this column reader.
~RNTupleColumnReader() override=default
RFieldBase * fProtoField
The prototype field from which fField is cloned.
Long64_t fLastEntry
Last entry number that was read.
void Disconnect(bool keepValue)
An artificial field that transforms an RNTuple column that contains the offset of collections into co...
RRDFCardinalityField(RRDFCardinalityField &&other)=default
size_t GetAlignment() const final
As a rule of thumb, the alignment is equal to the size of the type.
void GenerateColumns() final
Implementations in derived classes should create the backing columns corresponding to the field type ...
void ReadGlobalImpl(ROOT::NTupleSize_t globalIndex, void *to) final
Get the number of elements of the collection identified by globalIndex.
RRDFCardinalityField & operator=(RRDFCardinalityField &&other)=default
void GenerateColumns(const ROOT::RNTupleDescriptor &desc) final
Implementations in derived classes should create the backing columns corresponding to the field type ...
~RRDFCardinalityField() override=default
const RColumnRepresentations & GetColumnRepresentations() const final
Implementations in derived classes should return a static RColumnRepresentations object.
size_t GetValueSize() const final
The number of bytes taken by a value of the appropriate type.
void ReadInClusterImpl(ROOT::RNTupleLocalIndex localIndex, void *to) final
Get the number of elements of the collection identified by clusterIndex.
std::unique_ptr< ROOT::RFieldBase > CloneImpl(std::string_view) const final
Called by Clone(), which additionally copies the on-disk ID.
void ConstructValue(void *where) const final
Constructs value in a given location of size at least GetValueSize(). Called by the base class' Creat...
static void SetClusterBunchSize(RNTupleReadOptions &options, unsigned int val)
Abstract interface to read data from an ntuple.
static std::unique_ptr< RPageSource > Create(std::string_view ntupleName, std::string_view location, const ROOT::RNTupleReadOptions &options=ROOT::RNTupleReadOptions())
Guess the concrete derived page source from the file name (location)
std::vector< void * > Record_t
The RDataSource implementation for RNTuple.
void AddField(const ROOT::RNTupleDescriptor &desc, std::string_view colName, ROOT::DescriptorId_t fieldId, std::vector< RFieldInfo > fieldInfos, bool convertToRVec=true)
Provides the RDF column "colName" given the field identified by fieldID.
std::vector< std::pair< ULong64_t, ULong64_t > > GetEntryRanges() final
Return ranges of entries to distribute to tasks.
void ExecStaging()
The main function of the fThreadStaging background thread.
std::vector< std::unique_ptr< ROOT::Internal::RPageSource > > fStagingArea
The staging area is relevant for chains of files, i.e.
std::unique_ptr< ROOT::Detail::RDF::RColumnReaderBase > GetColumnReaders(unsigned int, std::string_view, const std::type_info &) final
If the other GetColumnReaders overload returns an empty vector, this overload will be called instead.
std::vector< std::unique_ptr< ROOT::RFieldBase > > fProtoFields
We prepare a prototype field for every column.
void SetNSlots(unsigned int nSlots) final
Inform RDataSource of the number of processing slots (i.e.
std::vector< std::string > fFileNames
void InitSlot(unsigned int slot, ULong64_t firstEntry) final
Convenience method called at the start of the data processing associated to a slot.
RNTupleDS(std::unique_ptr< ROOT::Internal::RPageSource > pageSource)
std::string GetTypeName(std::string_view colName) const final
Type of a column as a string, e.g.
std::unordered_map< ROOT::DescriptorId_t, std::string > fFieldId2QualifiedName
Connects the IDs of active proto fields and their subfields to their fully qualified name (a....
std::string fNTupleName
The data source may be constructed with an ntuple name and a list of files.
void PrepareNextRanges()
Populates fNextRanges with the next set of entry ranges.
void StageNextSources()
Starting from fNextFileIndex, opens the next fNSlots files.
void Finalize() final
Convenience method called after concluding an event-loop.
std::vector< std::string > fColumnTypes
void Initialize() final
Convenience method called before starting an event-loop.
std::vector< std::string > fColumnNames
bool HasColumn(std::string_view colName) const final
Checks if the dataset has a certain column.
Record_t GetColumnReadersImpl(std::string_view name, const std::type_info &) final
type-erased vector of pointers to pointers to column values - one per slot
void FinalizeSlot(unsigned int slot) final
Convenience method called at the end of the data processing associated to a slot.
ROOT's RDataFrame offers a modern, high-level interface for analysis of data stored in TTree ,...
Base class for all ROOT issued exceptions.
The list of column representations a field can have.
A field translates read and write calls from/to underlying columns to/from tree values.
ROOT::Internal::RColumn * fPrincipalColumn
All fields that have columns have a distinct main column.
RConstSchemaIterator cbegin() const
const std::string & GetFieldName() const
static RResult< std::unique_ptr< RFieldBase > > Create(const std::string &fieldName, const std::string &typeName, const ROOT::RCreateFieldOptions &options, const ROOT::RNTupleDescriptor *desc, ROOT::DescriptorId_t fieldId)
Factory method to resurrect a field from the stored on-disk type information.
ROOT::DescriptorId_t GetOnDiskId() const
std::unique_ptr< RFieldBase > Clone(std::string_view newName) const
Copies the field and its subfields using a possibly new name and a new, unconnected set of columns.
The on-storage metadata of an RNTuple.
RFieldDescriptorIterable GetFieldIterable(const RFieldDescriptor &fieldDesc) const
const RFieldDescriptor & GetFieldDescriptor(ROOT::DescriptorId_t fieldId) const
ROOT::DescriptorId_t FindFieldId(std::string_view fieldName, ROOT::DescriptorId_t parentId) const
Addresses a column element or field item relative to a particular cluster, instead of a global NTuple...
Common user-tunable settings for reading RNTuples.
const_iterator begin() const
const_iterator end() const
virtual const char * Getenv(const char *env)
Get environment variable.
std::string TypeID2TypeName(const std::type_info &id)
Returns the name of a type starting from its type_info An empty string is returned in case of failure...
void CallConnectPageSourceOnField(RFieldBase &, ROOT::Internal::RPageSource &)
std::string GetRenormalizedTypeName(const std::string &metaNormalizedName)
Given a type name normalized by ROOT meta, renormalize it for RNTuple. E.g., insert std::prefix.
RDataFrame FromRNTuple(std::string_view ntupleName, std::string_view fileName)
tbb::task_arena is an alias of tbb::interface7::task_arena, which doesn't allow to forward declare tb...
std::uint64_t DescriptorId_t
Distriniguishes elements of the same type within a descriptor, e.g. different fields.
std::uint64_t NTupleSize_t
Integer type long enough to hold the maximum number of entries in a column.
constexpr DescriptorId_t kInvalidDescriptorId
ENTupleStructure
The fields in the ntuple model tree can carry different structural information about the type system.
The PrepareNextRanges() method populates the fNextRanges list with REntryRangeDS records.